NanoPrePro Documentation
========================

NanoPrePro is a pre-processor for Oxford Nanopore transcriptomic sequencing data.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   usage
   output


Citation
~~~~~~~~~~

If you use NanoPrePro in your research, please cite:

Chu C, Yu J, Kuo S, Yang F, Lin C, Chen C, Wu Y, Shih C, 
Sun Y, Mai T, Chen Y, Lin H, Su J, Lin Y (2025). 
**NanoPrePro: a fully-equipped, fast, and memory-efficient pre-processor for Nanopore transcriptomic sequencing.**

(Preprint / Journal reference here when available.)